| 1. Alafia River |
33. Hillsboro River |
64. Reedy Creek |
| 2. Alapaha River |
34. Hillsborough River |
65. Ribault River |
| 3. Alexander Springs Creek |
35. Homosassa River |
66. Rice Creek |
| 4. Amelia River |
36. Ichetucknee River |
67. Salt Springs River |
| 5. Anclote River |
37. Istokpoga Creek |
68. Santa Fe River |
| 6. Apalachicola River |
38. Julington Creek |
69. Sepulgia Creek |
| 7. Arlington River |
39. Juniper Creek |
70. Shoal River |
| 8. Aucilla River |
40. Kissimmee River |
71. Sisters Creek |
| 9. Bells River |
41. Lake Marion Creek |
72. Snell Creek |
| 10. Black Creek |
42. Little Econlockhatchee River |
73. Sopchoppy River |
| 11. Blackwater River |
43. Little Manatee River |
74. South Amelia River |
| 12. Bonnet Creek |
44. Little Trout River |
75. St. Johns River |
| 13. Braden River |
45. Little Wekiva River |
76. St. Lucie River |
| 14. Braden River |
46. Little Withlacoochee River |
77. St. Marks River |
| 15. Broward River |
47. Loxahatchee River |
78. St. Marys River |
| 16. Caloosahatchee River |
48. Manatee River |
79. Steinhatchee River |
| 17. Chipola River |
49. Miami River |
80. Suwannee River |
| 18. Choctawhatchee River |
50. Myakka River |
81. Sweetwater Creek |
| 19. Coldwater River |
51. Nassau River |
82. Telogia Creek |
| 20. Crystal River |
52. New River (Broward County) |
83. Thomas Creek |
| 21. Cypress Creek |
53. New River in Collier County |
84. Trout River |
| 22. Dead River |
54. New River in Franklin County |
85. Waccasassa River |
| 23. Deep Creek |
55. New River in Pasco County |
86. Wacissa River |
| 24. Dunns Creek |
56. New River in Union County |
87. Wacissa River |
| 25. Econfina Creek |
57. Ochlockonee River |
88. Wakulla River |
| 26. Econfina River |
58. Ocklawaha River |
89. Weeki Wachee River |
| 27. Econlockhatchee River |
59. Ortega River |
90. Wekiva River |
| 28. ends in Lake Hatchineha |
60. Palm River |
91. Whittenhorse Creek |
| 29. Escambia River |
61. Peace River |
92. Withlacoochee River (Central Florida) |
| 30. Fenholloway River |
62. Perdido River |
93. Withlacoochee River (North Florida) |
| 31. Fort George River |
63. Pithlachascotee River |
94. Yellow River |
| 32. Halifax River |
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